## Error in library(future.apply) :
## there is no package called 'future.apply'
Samples: dcDNA Seq
pychopper: no
mapping version: v6
LoRTIA: yes (stranded only output)
## Bootstrap (r = 0.5)... Done.
## Bootstrap (r = 0.59)... Done.
## Bootstrap (r = 0.7)... Done.
## Bootstrap (r = 0.79)... Done.
## Bootstrap (r = 0.89)... Done.
## Bootstrap (r = 1.0)... Done.
## Bootstrap (r = 1.09)... Done.
## Bootstrap (r = 1.2)... Done.
## Bootstrap (r = 1.29)... Done.
## Bootstrap (r = 1.39)... Done.
The sample 48h_3 stands out!
## Bootstrap (r = 0.5)... Done.
## Bootstrap (r = 0.58)... Done.
## Bootstrap (r = 0.69)... Done.
## Bootstrap (r = 0.77)... Done.
## Bootstrap (r = 0.88)... Done.
## Bootstrap (r = 1.0)... Done.
## Bootstrap (r = 1.08)... Done.
## Bootstrap (r = 1.19)... Done.
## Bootstrap (r = 1.27)... Done.
## Bootstrap (r = 1.38)... Done.
## [1] "ORF38" "ORF43" "ORF44" "ORF58" "ORF25" "ORF35.5" "ORF64_1"
## [8] "ORF50" "ORF42" "ORF33" "ORF34" "ORF62" "ORF4" "ORF20"
## [15] "ORF21" "ORF61" "ORF31" "ORF1" "NOIR_1" "ORF32" "ORF59"
## [22] "ORF69"
## [1] 22
## [1] "ORF20" "ORF61" "ORF21" "ORF49" "ORF19" "ORF31" "ORF1" "ORF25"
## [9] "ORF33" "ORF62" "ORF18" "ORF32" "ORF59" "NOIR_1" "ORF69"
## [1] 15
## [1] "ORF20" "ORF61" "ORF21" "ORF49" "ORF19" "ORF31" "ORF1"
## [8] "ORF25" "ORF35.5" "ORF18" "ORF42" "ORF33" "ORF62" "ORF69"
## [1] 14
## [1] "ORF9" "ORF1" "ORF25" "ORF35.5" "ORF66_1" "ORF3" "ORF18"
## [8] "ORF42" "ORF33" "ORF62" "ORF49" "NOIR_1" "ORF69"
## [1] 13
## [1] "ORF20" "ORF61" "ORF21" "ORF49" "ORF19" "ORF31" "ORF1" "ORF25"
## [9] "ORF33" "ORF62" "ORF18" "ORF32" "ORF59" "NOIR_1" "ORF69"
## [1] 15
## [1] "gene" "Kinetic_class" "cluster" "1h"
## [5] "2h" "4h" "6h" "8h"
## [9] "12h" "18h" "24h" "48h"
NA shows the number of genes where the clustering did not yield an unambiguous result.